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- trait.relabun.csv [1%] by jplaut, 2008-06-02 11:13
- This is the relative abundances of each trait on each plot; it's the output of trait.relabun.csv and it's what we should be using for analysis.
- trait.relabun.R [1%] by jplaut, 2008-06-02 11:12
- Uses the raw abundances in trait.grid.csv to calculate the relative abundances for each trait and output trait.relabun.csv. The only thing I can't get it to ...
- trait.grid.csv [1%] by jplaut, 2008-06-02 11:10
- This is the output from traits.grid.R - abundances summed by trait (for the categorical traits) with the same index columns as Full.grid.csv, the species-based ...
- trait.grid.R [1%] by jplaut, 2008-06-02 11:09
- This is code from Dan Bunker which uses Full.grid.csv and clean.traits.csv to generate traits.grid.csv. You will need to download the "reshape" and "Hmisc" ...
- clean.traits.csv [1%] by jplaut, 2008-06-02 09:43
- This is the standardized traits data, to be used for analyses.
- clean_traits.R [1%] by jplaut, 2008-06-02 09:37
- This R script cleans up traits.csv, standardizing attributes, and outputs clean.traits.csv.
- Working R scripts and relevant .csv files [1%] by jplaut, 2008-05-29 12:40
- These are all the files that currently work, including the output files so you don't have to actually run the R scripts!
- fill.trait.grid.R [1%] by jplaut, 2008-05-29 12:00
- This R script is intended to fill the traits grid, but so far is not functional. It uses data from Full.grid.csv and from clean.traits.csv.
- mk.traits.grid.R [1%] by jplaut, 2008-05-29 11:59
- This is a similar file to mk.grid.R; it makes the same index columns but the other columns are traits, not species. So column headings are DC (dicot), MC ...
- Full.grid.csv [1%] by jplaut, 2008-05-29 11:55
- This is the key species-based abundance table, to be used for analysis. Index columns are year (1991-2006), treatment (c=control, i=irrigated), elevation ...
- fill.grid.R [1%] by jplaut, 2008-05-29 11:54
- This R script fills the empty grid from mk.grid.R with data from AbunData.csv. Run these two files in order using the species.grid.R script!
- mk.grid.R [1%] by jplaut, 2008-05-29 11:53
- Generates an empty table for the species-based abundance data.
- species.grid.R [1%] by jplaut, 2008-05-29 11:52
- This R script prompts the user to run mk.grid.R and fill.grid.R, using AbunData.csv to create a species-based abundance table (Full.grid.csv). Index columns ...
- traits.csv [1%] by jplaut, 2008-05-29 11:37
- The raw traits file.
- richness.R [1%] by jplaut, 2008-05-29 11:35
- This R script generates .pdf graphs of species richness changes through time.
- WAT013_clean.R [1%] by jplaut, 2008-05-29 11:33
- This R script cleans up WAT013.csv; it standardizes attributes, corrects some species mis-numberings, and gives upper and lower plot mean abundances.
- WAT013.csv [1%] by jplaut, 2008-05-29 11:31
- This is the raw data downloaded from the Konza LTER website; the most recent several years of data were given to us by ___________. Prior to inputting these ...
- AbunData.csv [1%] by jplaut, 2008-05-29 11:29
- This is the cleaned-up WAT013.csv; the format is NOT appropriate for any kind of data analysis, though!
- R scripts under construction! [1%] by jplaut, 2008-05-22 11:08